PREFIX fhir:
PREFIX fhirvs:
PREFIX xsd:
BASE
start=@ AND {fhir:nodeRole [fhir:treeRoot]}
# Sample for analysis
CLOSED {
a [fhir:Specimen];
fhir:nodeRole [fhir:treeRoot]?;
fhir:Resource.id id?; # Logical id of this artifact
fhir:Resource.meta @?; # Metadata about the resource
fhir:Resource.implicitRules @?; # A set of rules under which this
# content was created
fhir:Resource.language @?; # Language of the resource content
fhir:DomainResource.text @?; # Text summary of the resource, for
# human interpretation
fhir:DomainResource.contained @*; # Contained, inline Resources
fhir:DomainResource.extension @*; # Additional content defined by
# implementations
fhir:DomainResource.modifierExtension @*; # Extensions that cannot be ignored
fhir:Specimen.identifier @*; # External Identifier
fhir:Specimen.accessionIdentifier @?; # Identifier assigned by the lab
fhir:Specimen.status @ AND
{fhir:value @fhirvs:specimen-status}?; # available | unavailable |
# unsatisfactory | entered-in-error
fhir:Specimen.type @?; # Kind of material that forms the
# specimen
fhir:Specimen.subject @?; # Where the specimen came from. This
# may be from patient(s), from a
# location (e.g., the source of an
# environmental sample), or a
# sampling of a substance or a
# device
fhir:Specimen.receivedTime @?; # The time when specimen was
# received for processing
fhir:Specimen.parent @*; # Specimen from which this specimen
# originated
fhir:Specimen.request @*; # Why the specimen was collected
fhir:Specimen.collection @?; # Collection details
fhir:Specimen.processing @*; # Processing and processing step
# details
fhir:Specimen.container @*; # Direct container of specimen
# (tube/slide, etc.)
fhir:Specimen.condition @*; # State of the specimen
fhir:Specimen.note @*; # Comments
fhir:index xsd:integer? # Relative position in a list
}
# Collection details
CLOSED {
fhir:Element.id string?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:BackboneElement.modifierExtension @*; # Extensions that cannot be ignored
# even if unrecognized
fhir:Specimen.collection.collector @?; # Who collected the specimen
( # Collection time
fhir:Specimen.collection.collectedDateTime @ |
fhir:Specimen.collection.collectedPeriod @
)?;
fhir:Specimen.collection.duration @?; # How long it took to collect
# specimen
fhir:Specimen.collection.quantity @?; # The quantity of specimen collected
fhir:Specimen.collection.method @?; # Technique used to perform
# collection
fhir:Specimen.collection.bodySite @?; # Anatomical collection site
( # Whether or how long patient
# abstained from food and/or drink
fhir:Specimen.collection.fastingStatusCodeableConcept @ |
fhir:Specimen.collection.fastingStatusDuration @
)?;
fhir:index xsd:integer? # Relative position in a list
}
# Processing and processing step details
CLOSED {
fhir:Element.id string?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:BackboneElement.modifierExtension @*; # Extensions that cannot be ignored
# even if unrecognized
fhir:Specimen.processing.description @?; # Textual description of procedure
fhir:Specimen.processing.procedure @?; # Indicates the treatment step
# applied to the specimen
fhir:Specimen.processing.additive @*; # Material used in the processing
# step
( # Date and time of specimen
# processing
fhir:Specimen.processing.timeDateTime @ |
fhir:Specimen.processing.timePeriod @
)?;
fhir:index xsd:integer? # Relative position in a list
}
# Direct container of specimen (tube/slide, etc.)
CLOSED {
fhir:Element.id string?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:BackboneElement.modifierExtension @*; # Extensions that cannot be ignored
# even if unrecognized
fhir:Specimen.container.identifier @*; # Id for the container
fhir:Specimen.container.description @?; # Textual description of the
# container
fhir:Specimen.container.type @?; # Kind of container directly
# associated with specimen
fhir:Specimen.container.capacity @?; # Container volume or size
fhir:Specimen.container.specimenQuantity @?; # Quantity of specimen within
# container
( # Additive associated with container
fhir:Specimen.container.additiveCodeableConcept @ |
fhir:Specimen.container.additiveReference @
)?;
fhir:index xsd:integer? # Relative position in a list
}
#---------------------- Data Types -------------------
# Primitive Type dateTime
CLOSED {
fhir:Element.id string?; # xml:id (or equivalent in JSON)
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:value dateTime?; # Primitive value for dateTime
fhir:index xsd:integer? # Relative position in a list
}
# Metadata about a resource
CLOSED {
fhir:Element.id id?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:Meta.versionId @?; # Version specific identifier
fhir:Meta.lastUpdated @?; # When the resource version last
# changed
fhir:Meta.source @?; # Identifies where the resource
# comes from
fhir:Meta.profile @*; # Profiles this resource claims to
# conform to
fhir:Meta.security @*; # Security Labels applied to this
# resource
fhir:Meta.tag @*; # Tags applied to this resource
fhir:index xsd:integer? # Relative position in a list
}
# Primitive Type code
CLOSED {
fhir:Element.id string?; # xml:id (or equivalent in JSON)
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:value code?; # Primitive value for code
fhir:index xsd:integer? # Relative position in a list
}
# Primitive Type string
CLOSED {
fhir:Element.id string?; # xml:id (or equivalent in JSON)
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:value string MAXLENGTH 1048576?; # Primitive value for string
fhir:index xsd:integer? # Relative position in a list
}
# A reference from one resource to another
CLOSED {
fhir:link IRI?;
fhir:Element.id id?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:Reference.reference @?; # Literal reference, Relative,
# internal or absolute URL
fhir:Reference.type @?; # Type the reference refers to (e.g.
# "Patient")
fhir:Reference.identifier @?; # Logical reference, when literal
# reference is not known
fhir:Reference.display @?; # Text alternative for the resource
fhir:index xsd:integer? # Relative position in a list
}
# Base Resource
{a .+;
fhir:Resource.id id?; # Logical id of this artifact
fhir:Resource.meta @?; # Metadata about the resource
fhir:Resource.implicitRules @?; # A set of rules under which this
# content was created
fhir:Resource.language @?; # Language of the resource content
fhir:index xsd:integer?
}
# A fixed quantity (no comparator)
CLOSED {
fhir:Element.id id?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:Quantity.value @?; # Numerical value (with implicit
# precision)
fhir:Quantity.unit @?; # Unit representation
fhir:Quantity.system @?; # System that defines coded unit form
fhir:Quantity.code @?; # Coded form of the unit
fhir:index xsd:integer? # Relative position in a list
}
# Time range defined by start and end date/time
CLOSED {
fhir:Element.id id?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:Period.start @?; # Starting time with inclusive
# boundary
fhir:Period.end @?; # End time with inclusive boundary,
# if not ongoing
fhir:index xsd:integer? # Relative position in a list
}
# A length of time
CLOSED {
fhir:Element.id id?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:Quantity.value @?; # Numerical value (with implicit
# precision)
fhir:Quantity.comparator @ AND
{fhir:value @fhirvs:quantity-comparator}?; # < | <= | >= | > - how to
# understand the value
fhir:Quantity.unit @?; # Unit representation
fhir:Quantity.system @?; # System that defines coded unit form
fhir:Quantity.code @?; # Coded form of the unit
fhir:index xsd:integer? # Relative position in a list
}
# Primitive Type uri
CLOSED {
fhir:Element.id string?; # xml:id (or equivalent in JSON)
fhir:Element.extension @*; # Additional content defined by
# implementations
fhir:value uri?; # Primitive value for uri
fhir:index xsd:integer? # Relative position in a list
}
# Text node with attribution
CLOSED {
fhir:Element.id id?; # Unique id for inter-element
# referencing
fhir:Element.extension @*; # Additional content defined by
# implementations
( # Individual responsible for the
# annotation
fhir:Annotation.authorReference @ |
fhir:Annotation.authorString @
)?;
fhir:Annotation.time @?; # When the annotation was made
fhir:Annotation.text @; # The annotation - text content (as
# markdown)
fhir:index xsd:integer? # Relative position in a list
}
# Optional Extensions Element
CLOSED {
fhir:Element.id id?;
fhir:Element.extension @*;
fhir:Extension.url uri;
(
fhir:Extension.valueBase64Binary @ |
fhir:Extension.valueBoolean @ |
fhir:Extension.valueCanonical @ |
fhir:Extension.valueCode @ |
fhir:Extension.valueDate @ |
fhir:Extension.valueDateTime @ |
fhir:Extension.valueDecimal @ |
fhir:Extension.valueId @ |
fhir:Extension.valueInstant @ |
fhir:Extension.valueInteger @ |
fhir:Extension.valueMarkdown @ |
fhir:Extension.valueOid @ |
fhir:Extension.valuePositiveInt @ |
fhir:Extension.valueString @ |
fhir:Extension.valueTime @