@prefix fhir: . @prefix owl: . @prefix rdfs: . @prefix xsd: . # - resource ------------------------------------------------------------------- a fhir:MolecularSequence; fhir:nodeRole fhir:treeRoot; fhir:Resource.id [ fhir:value "fda-vcf-comparison"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "

Generated Narrative

Resource "fda-vcf-comparison"

coordinateSystem: 1

patient: Patient/example "Peter CHALMERS"

ReferenceSeqs

-	ReferenceSeqId	Strand	WindowStart	WindowEnd
*	NC_000001.11 (nuccore#NC_000001.11)	watson	10453	101770080

Variants

-	Start	End	ObservedAllele	ReferenceAllele
*	13116	13117	T	G

Qualities

Type

StandardSequence

Start

End

Score

Method

TruthTP

TruthFN

QueryFP

GtFP

Precision

FScore

unknown

file-BkZxBZ00bpJVk2q6x43b1YBx (#file-BkZxBZ00bpJVk2q6x43b1YBx)

10453

101770080

5.000

VCF Comparison (#app-BqB9XZ8006ZZ2g5KzGXP3fpq)

129481

3168

1507

2186

0.9885

0.9823

Repositories

-	Type	Url	Name
*	login	https://precision.fda.gov/comparisons/1850	FDA

" ]; fhir:MolecularSequence.coordinateSystem [ fhir:value "1"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/example" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/nuccore" ]; fhir:Coding.code [ fhir:value "NC_000001.11" ] ] ]; fhir:MolecularSequence.referenceSeq.strand [ fhir:value "watson" ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "10453"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "101770080"^^xsd:integer ] ]; fhir:MolecularSequence.variant [ fhir:index 0; fhir:MolecularSequence.variant.start [ fhir:value "13116"^^xsd:integer ]; fhir:MolecularSequence.variant.end [ fhir:value "13117"^^xsd:integer ]; fhir:MolecularSequence.variant.observedAllele [ fhir:value "T" ]; fhir:MolecularSequence.variant.referenceAllele [ fhir:value "G" ] ]; fhir:MolecularSequence.quality [ fhir:index 0; fhir:MolecularSequence.quality.type [ fhir:value "unknown" ]; fhir:MolecularSequence.quality.standardSequence [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "https://precision.fda.gov/files/" ]; fhir:Coding.code [ fhir:value "file-BkZxBZ00bpJVk2q6x43b1YBx" ] ] ]; fhir:MolecularSequence.quality.start [ fhir:value "10453"^^xsd:integer ]; fhir:MolecularSequence.quality.end [ fhir:value "101770080"^^xsd:integer ]; fhir:MolecularSequence.quality.score [ fhir:Quantity.value [ fhir:value "5.000"^^xsd:decimal ] ]; fhir:MolecularSequence.quality.method [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "https://precision.fda.gov/apps/" ]; fhir:Coding.code [ fhir:value "app-BqB9XZ8006ZZ2g5KzGXP3fpq" ] ]; fhir:CodeableConcept.text [ fhir:value "VCF Comparison" ] ]; fhir:MolecularSequence.quality.truthTP [ fhir:value "129481"^^xsd:decimal ]; fhir:MolecularSequence.quality.truthFN [ fhir:value "3168"^^xsd:decimal ]; fhir:MolecularSequence.quality.queryFP [ fhir:value "1507"^^xsd:decimal ]; fhir:MolecularSequence.quality.gtFP [ fhir:value "2186"^^xsd:decimal ]; fhir:MolecularSequence.quality.precision [ fhir:value "0.9885"^^xsd:decimal ]; fhir:MolecularSequence.quality.fScore [ fhir:value "0.9823"^^xsd:decimal ] ]; fhir:MolecularSequence.repository [ fhir:index 0; fhir:MolecularSequence.repository.type [ fhir:value "login" ]; fhir:MolecularSequence.repository.url [ fhir:value "https://precision.fda.gov/comparisons/1850" ]; fhir:MolecularSequence.repository.name [ fhir:value "FDA" ] ] . a fhir:Patient . # - ontology header ------------------------------------------------------------ a owl:Ontology; owl:imports fhir:fhir.ttl; owl:versionIRI . # -------------------------------------------------------------------------------------