@prefix fhir: . @prefix loinc: . @prefix owl: . @prefix rdfs: . @prefix xsd: . # - resource ------------------------------------------------------------------- a fhir:Bundle; fhir:nodeRole fhir:treeRoot; fhir:Resource.id [ fhir:value "hla-1"]; fhir:Bundle.type [ fhir:value "transaction"]; fhir:Bundle.entry [ fhir:index 0; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:b0a4b18e-94e7-4b1b-8031-c7ae4bdd8db9" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "DiagnosticReport" ] ] ], [ fhir:index 1; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:8200dab6-18a2-4550-b913-a7db480c0804" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 2; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:7c393185-f15c-45bc-a714-c0fdbea32675" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 3; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:65c85f14-c3a0-4b72-818f-820e04fcc621" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 4; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:fbba9fe7-0ece-4ec1-9233-a437a8d242a0" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 5; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:cbabf93e-1b4b-46f2-ba1e-d84862670670" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 6; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:c233ad3d-1572-48d6-93da-0a583535e138" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 7; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:05fa52d7-5c67-460a-8722-d3460b24d6fe" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 8; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:db69e549-6267-4777-b4b9-8813f3329309" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 9; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:bb55c2bc-5ad2-4bc1-8ff3-c407d06b12d0" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 10; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:46938bb2-0486-4e87-bfd3-89aab2d5e22f" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 11; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:2ae2ff34-279e-43c2-9018-b054fd3fc1ce" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 12; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:19153ef1-68c6-47a2-9676-c4eefbd39af9" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "MolecularSequence" ] ] ], [ fhir:index 13; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 14; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 15; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 16; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 17; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 18; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 19; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:709c5315-9403-4867-9d82-0b953836665f" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 20; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ], [ fhir:index 21; fhir:Bundle.entry.fullUrl [ fhir:value "urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208" ]; fhir:Bundle.entry.resource ; fhir:Bundle.entry.request [ fhir:Bundle.entry.request.method [ fhir:value "POST" ]; fhir:Bundle.entry.request.url [ fhir:value "Observation" ] ] ] . a fhir:DiagnosticReport; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n

HLA-A,-B,-C genotyping report for Mary Chalmers (MRN:12345)

\n
\n  LOCUS   ALLELE 1            ALLELE 2\n  HLA-A   HLA-A:01:01G        HLA-A*01:02\n  HLA-B   HLA-B*15:01:01G     HLA-B*57:01:01G\n  HLA-C   HLA-C*01:02:01G     HLA-C*03:04:01G\n                
\n

Allele assignments based on IMGT/HLA 3.23

\n

Effective date: 2015-12-15

\n

Method: Sequencing of exons 2 and 3 of HLA Class I genes

\n

Lab: aTypingLab Inc

\n

Note: Please refer the implementation guide for more explanation on this\n carefully organized bundle example.

\n
\n  Bob Milius - NMDP - 2016-12-01\n\n  Transaction bundle that creates and links:\n  + DiagnosticReport summarizing genotyping for HLA-A,-B,-C typing of patient(donor)\n  + Obervations for each genotype\n  + Observations for each allele\n  + Sequences for exons 2 and 3 for HLA-A,-B, -C\n\n  The endpoints of the following resources are hardcoded into this transaction bundle\n  because these are presumed to already exist when developing the DiagnosticRequest\n  which was to generate this report bundle:\n\n  Patient/119 (potential donor)\n  Specimen/120 (buccal swab)\n  Organization/68  (typing lab)\n  ServiceRequest/123  (report is based on this request)\n                
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ] ]; fhir:CodeableConcept.text [ fhir:value "IMGT/HLA 3.23" ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring" ]; fhir:Element.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "text" ]; fhir:Extension.valueString [ fhir:value "HLA-A:01:01G+HLA-A*01:02^HLA-B*15:01:01:01+HLA-B*57:01:01^HLA-C*01:02:01+HLA-C*03:04:01:01" ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "url" ]; fhir:Extension.valueUri [ fhir:value "https://gl.nmdp.org/imgt-hla/3.23.0/multilocus-unphased-genotype/i" ] ] ], [ fhir:index 2; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-method" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/gtr/" ]; fhir:Coding.code [ fhir:value "GTR000000000.0" ] ]; fhir:CodeableConcept.text [ fhir:value "Next Generation Sequencing of exons 2 and 3 of HLA Class I genes" ] ] ]; fhir:DiagnosticReport.basedOn [ fhir:index 0; fhir:link ; fhir:Reference.reference [ fhir:value "ServiceRequest/123" ] ]; fhir:DiagnosticReport.status [ fhir:value "final"]; fhir:DiagnosticReport.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0074" ]; fhir:Coding.code [ fhir:value "GE" ]; fhir:Coding.display [ fhir:value "Genetics" ] ] ]; fhir:DiagnosticReport.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:13303-3; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "13303-3" ]; fhir:Coding.display [ fhir:value "HLA-A+​B+​C (class I) [Type]" ] ] ]; fhir:DiagnosticReport.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:DiagnosticReport.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:DiagnosticReport.issued [ fhir:value "2016-12-15T14:15:30-06:00"^^xsd:dateTime]; fhir:DiagnosticReport.performer [ fhir:index 0; fhir:link ; fhir:Reference.reference [ fhir:value "Organization/68" ]; fhir:Reference.display [ fhir:value "aTypingLab Inc" ] ]; fhir:DiagnosticReport.specimen [ fhir:index 0; fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/67" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:DiagnosticReport.result [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228" ]; fhir:Reference.display [ fhir:value "HLA-A: HLA-A:01:01G+HLA-A*01:02" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70" ]; fhir:Reference.display [ fhir:value "HLA-B: HLA-B*15:01:01G+HLA-B*57:01:01G" ] ], [ fhir:index 2; fhir:Reference.reference [ fhir:value "urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208" ]; fhir:Reference.display [ fhir:value "HLA-C: HLA-C*01:02:01G+HLA-C*03:04:01G" ] ] . a fhir:ServiceRequest . a fhir:Patient . a fhir:Organization . a fhir:Specimen . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-A*01:01:01:01, exon 2"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00001" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-A*01:01:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "503"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "773"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG"] . a fhir:Specimen . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-A*01:01:01:01, exon 3"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00001" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-A*01:01:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "1014"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "1290"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-A*01:02, exon 2"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00002" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-A*01:02" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "503"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "773"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCAGTGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-A*01:02, exon 3"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00002" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-A*01:02" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "1014"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "1290"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-B*15:01:01:01, exon 2"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00162" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-B*15:01:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "486"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "756"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGATCTCCAAGACCAACACACAGACTTACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-B*15:01:01:01, exon 3"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00162" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-B*15:01:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "1001"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "1277"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GGTCTCACACCCTCCAGAGGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGTGGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-B*57:01:01, exon 2"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00381" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-B*57:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "485"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "755"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACACGGAACATGAAGGCCTCCGCGCAGACTTACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGCCG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-B*57:01:01, exon 3"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00381" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-B*57:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "1001"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "1277"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GGTCTCACATCATCCAGGTGATGTATGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGTGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-C*01:02:01, exon 2"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00401" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-C*01:02:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "486"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "756"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GCTCCCACTCCATGAAGTATTTCTTCACATCCGTGTCCCGGCCTGGCCGCGGAGAGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-C*01:02:01, exon 3"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00401" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-C*01:02:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "1002"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "1278"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GGTCTCACACCCTCCAGTGGATGTGTGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-C*03:04:01:01, exon 2"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00413" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-C*03:04:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "486"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "756"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GCTCCCACTCCATGAGGTATTTCTACACCGCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCACTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG"] . a fhir:MolecularSequence; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
"HLA-C*03:04:01:01, exon 3"
\n
" ]; fhir:MolecularSequence.type [ fhir:value "dna"]; fhir:MolecularSequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:MolecularSequence.patient [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:MolecularSequence.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:MolecularSequence.referenceSeq [ fhir:MolecularSequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ebi.ac.uk/ipd/imgt/hla" ]; fhir:Coding.version [ fhir:value "3.23" ]; fhir:Coding.code [ fhir:value "HLA00413" ] ]; fhir:CodeableConcept.text [ fhir:value "HLA-C*03:04:01:01" ] ]; fhir:MolecularSequence.referenceSeq.windowStart [ fhir:value "1001"^^xsd:integer ]; fhir:MolecularSequence.referenceSeq.windowEnd [ fhir:value "1277"^^xsd:integer ] ]; fhir:MolecularSequence.observedSeq [ fhir:value "GGTCTCACATCATCCAGAGGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGATCTGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGAAGAATGGGAAGGAGACGCTGCAGCGCGCGG"] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-A:01:01:01G
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4931" ]; fhir:Coding.display [ fhir:value "HLA-A" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:57290-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "57290-9" ]; fhir:Coding.display [ fhir:value "HLA-A [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:8200dab6-18a2-4550-b913-a7db480c0804" ]; fhir:Reference.display [ fhir:value "HLA-A*01:01:01:01, exon 2" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:7c393185-f15c-45bc-a714-c0fdbea32675" ]; fhir:Reference.display [ fhir:value "HLA-A*01:01:01:01, exon 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-A*01:02
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4931" ]; fhir:Coding.display [ fhir:value "HLA-A" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:57290-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "57290-9" ]; fhir:Coding.display [ fhir:value "HLA-A [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:65c85f14-c3a0-4b72-818f-820e04fcc621" ]; fhir:Reference.display [ fhir:value "HLA-A*01:02, exon 2" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:fbba9fe7-0ece-4ec1-9233-a437a8d242a0" ]; fhir:Reference.display [ fhir:value "HLA-A*01:02, exon 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-A:01:01G+HLA-A*01:02
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4931" ]; fhir:Coding.display [ fhir:value "HLA-A" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:57290-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "57290-9" ]; fhir:Coding.display [ fhir:value "HLA-A [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6" ]; fhir:Reference.display [ fhir:value "HLA-A*01:01:01G, exons 2 and 3" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32" ]; fhir:Reference.display [ fhir:value "HLA-A*01:02, exons 2 and 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-B*15:01:01G
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4932" ]; fhir:Coding.display [ fhir:value "HLA-B" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:57291-7; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "57291-7" ]; fhir:Coding.display [ fhir:value "HLA-B [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:cbabf93e-1b4b-46f2-ba1e-d84862670670" ]; fhir:Reference.display [ fhir:value "HLA-B*15:01:01:01, exon 2" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:c233ad3d-1572-48d6-93da-0a583535e138" ]; fhir:Reference.display [ fhir:value "HLA-B*15:01:01:01, exon 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-B*57:01:01G
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4932" ]; fhir:Coding.display [ fhir:value "HLA-B" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:57291-7; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "57291-7" ]; fhir:Coding.display [ fhir:value "HLA-B [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:05fa52d7-5c67-460a-8722-d3460b24d6fe" ]; fhir:Reference.display [ fhir:value "HLA-B*57:01:01, exon 2" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:db69e549-6267-4777-b4b9-8813f3329309" ]; fhir:Reference.display [ fhir:value "HLA-B*57:01:01, exon 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-B*15:01:01G+HLA-B*57:01:01G
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4932" ]; fhir:Coding.display [ fhir:value "HLA-B" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:57291-7; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "57291-7" ]; fhir:Coding.display [ fhir:value "HLA-B [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a" ]; fhir:Reference.display [ fhir:value "HLA-B*15:01:01G, exons 2 and 3" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5" ]; fhir:Reference.display [ fhir:value "HLA-B*57:01:01G, exons 2 and 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-C*01:02:01
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4933" ]; fhir:Coding.display [ fhir:value "HLA-C" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:77636-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "77636-9" ]; fhir:Coding.display [ fhir:value "HLA-C [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:bb55c2bc-5ad2-4bc1-8ff3-c407d06b12d0" ]; fhir:Reference.display [ fhir:value "HLA-C*01:02:01, exon 2" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:46938bb2-0486-4e87-bfd3-89aab2d5e22f" ]; fhir:Reference.display [ fhir:value "HLA-C*01:02:01, exon 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-C*03:04:01:01
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4933" ]; fhir:Coding.display [ fhir:value "HLA-C" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:77636-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "77636-9" ]; fhir:Coding.display [ fhir:value "HLA-C [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:2ae2ff34-279e-43c2-9018-b054fd3fc1ce" ]; fhir:Reference.display [ fhir:value "HLA-C*03:04:01:01, exon 2" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:19153ef1-68c6-47a2-9676-c4eefbd39af9" ]; fhir:Reference.display [ fhir:value "HLA-C*03:04:01:01, exon 3" ] ] . a fhir:Observation; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "
\n
HLA-C*01:02:01G+HLA-C*03:04:01G
\n
" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "HGNC:4933" ]; fhir:Coding.display [ fhir:value "HLA-C" ] ] ] ], [ fhir:index 1; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/observation-geneticsGenomicSourceClass" ]; fhir:Extension.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA6683-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA6683-2" ]; fhir:Coding.display [ fhir:value "germline" ] ] ] ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:77636-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "77636-9" ]; fhir:Coding.display [ fhir:value "HLA-C [Type] by High resolution" ] ] ]; fhir:Observation.subject [ fhir:link ; fhir:Reference.reference [ fhir:value "Patient/119" ]; fhir:Reference.display [ fhir:value "Mary Chalmers" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2016-12-15"^^xsd:date]; fhir:Observation.specimen [ fhir:link ; fhir:Reference.reference [ fhir:value "Specimen/120" ]; fhir:Reference.display [ fhir:value "buccal swab from Mary Chalmers" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "urn:uuid:709c5315-9403-4867-9d82-0b953836665f" ]; fhir:Reference.display [ fhir:value "HLA-C*01:02:01G, exons 2 and 3" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47" ]; fhir:Reference.display [ fhir:value "HLA-C*03:04:01G, exons 2 and 3" ] ] . # - ontology header ------------------------------------------------------------ a owl:Ontology; owl:imports fhir:fhir.ttl; owl:versionIRI . # -------------------------------------------------------------------------------------